T. Kacar, Melvin T. Zin, Christopher So, B. Wilson, Hong Ma, N. Gul-Karaguler, Alex K-Y Jen, M. Sarikaya, C. Tamerler, “Directed Self-Immobilization of Alkaline Phosphatase on Micro-patterned Substrates via Genetically-Fused Metal-Binding Peptide”, Biotechnology and Bioengineering, In Press (2009).

J. H. Wei, T. Kacar, C. Tamerler, M. Sarikaya, and D. S. Ginger, “Nanopatterning peptides as Bi-functional Inks for Templated assembly”, Small, In Print (2009).

C. R. So., C. Tamerler, and M. Sarikaya, "Adsorption, Diffusion, and Self-Assembly of an Engineered Gold Binding peptide on Au(111) by atomic Force Microscopy", Angew Chem. Intl. Ed., In Print (2009).

C. Tamerler and M. Sarikaya, "Molecular Biomimetics: Nanotechnology and Molecular Medicine Utilizing Genetically Engineered Peptides", Philosphical Transactions-A, Published Online (2009). Article

Seker UOS, Wilson BR, Sahin D, Tamerler C, Sarikaya M, Quantitative Affinity of Genetically Engineered Repeating Polypeptides to Inorganic Solids, Biomacromolecules,2008. Article

Hnilova M, Oren EE, Seker UOS, Evans JS, Tamerler C, Sarikaya M, Effect of Conformation on the Adsorption Behavior of Gold Binding Peptides, Langmuir, 2008. Article

Kacar T, Ray J, Gungormus M, Oren EE, Tamerler C, Sarikaya M, Quartz Binding Peptides as Molecular Linkers towards Fabricating Multifunctional Micropatterned Substrates, Advanced Materials, 2008, Article

Donatan S, Yazici H, Bermek H, Sarikaya M, Tamerler C, Urgen M, Physical elution in phage display selection of inorganic-binding peptides, Materials Science and Engineering: C, 2008, Article

Seker UOS, Catal T, Taptik Y, Tamerler C,, Bermek H, Enhanced production of manganese-peroxidase by the white-rot fungus Bjerkandera adusta using media engineering, Biotechnology & Biotechnological Equipment, 22 (3), 844-848, 2008 Article

Dincer S, Tamerler C, Sarikaya M, Piskin E, Photoresponsive peptide-azobenzene conjugates that specifically interact with platinum surfaces, Surface Science, 602, (10), 1757-1762, 2008 Article

Tamerler C, Sarikaya M, Molecular biomimetics: Genetic synthesis, assembly, and formation of materials using peptides, MRS Bulletin,  33 (5), 504-510, 2008. Article

Evans JS, Samudrala R, Walsh TR, Oren EE, Tamerler C, Molecular design of inorganic-binding polypeptides, MRS Bulletin,  33 (5), 514-518, 2008 Article

Arslan E, Igdil MC, Yazici H, Tamerler C, Bermek H, Trabzon L, Mechanical properties and biocompatibility of plasma-nitrided laser-cut 316L cardiovascular stents, Journal of Materials Science-Materials in Medicine, 19 (5), 2079-2086, 2008 Article

Gungormus M, Fong H, Kim IW, Evans JS, Tamerler C, Sarikaya M, Regulation of in vitro calcium phosphate mineralization by combinatorially selected hydroxyapatite-binding peptides, Biomacromolecules, 9 (3), 966-973, 2008. Article

Oren EE, Tamerler C, Sahin D, Hnilova M , Seker UOS, Sarikaya M, Samudrala R, A novel knowledge-based approach to design inorganic-binding peptides, Bioinformatics, 23 (21), 2816-2822, 2007 Aricle

Seker UOS, Wilson B, Dincer S, Kim IW, Oren EE, Evans JS, Tamerler C, Sarikaya M, Adsorption behavior of linear and cyclic genetically engineered platinum binding peptides, Langmuir, 23 (15), 7895-7900, 2007 Article


 

Tamerler C, Sarikaya M, Molecular biomimetics: Utilizing naturels molecular ways in practical engineering, Acta Biomaterialia, 3 (3), 289-299, 2007 Article

Suzuki N, Gamble L, Tamerler C, Sarikaya M, Castner DG, Ohuchi FS, Adsorption of genetically engineered proteins studied by time-of-flight secondary ion mass spectrometry (TOF-SIMS). Part A: data acquisition and principal component analysis (PICA), Surface and Interface Analysis, 39   (5), 419-426, 2007 Article

Tamerler C, Kacar T, Sahin D, Fong H, Sarikaya M, Genetically engineered polypeptides for inorganics: A utility in biological materials science and engineering, Materials Science & Engineering C-Biomimetic and Supramolecular Systems, 27 (3), 2007. Article

Zin MT, Munro AM, Gungormus M, Wong NY, Ma H, Tamerler C, Ginger DS, Sarikaya M, Jen AKY, Peptide-mediated surface-immobilized quantum dot hybrid nanoassemblies with controlled photoluminescence, Journal of Materials Chemistry, 17 (9), 866-872   Published: MAR 7 2007 Article

Insel G, Celikyilmaz G, Ucisik-Akkaya E, Yesiladali K, Cakar ZP , Tamerler C, Orhon D,  Respirometric evaluation and modeling of glucose utilization by Escherichia coli under aerobic and mesophilic cultivation conditions, Biotechnology and Bioengineering, 96 (1), 94-105, 2007 Article

Tamerler C, Duman M, Oren EE, Gungormus M, Xiong XR, Kacar T, Parviz BA, Sarikaya M Materials specificity and directed assembly of a gold-binding peptide, Small, 2 (11), 1372-1378   2006 Article

Yesiladali SK, Pekin G, Bermek H, Tamerler , Bioremediation of textile azo dyes by Trichophyton rubrum LSK-27, World Journal Of Microbiology & Biotechnology, 22 (10), 1027-1031, 2006 Article

Tamerler C, Oren EE, Duman M, Venkatasubramanian E, Sarikaya M, Adsorption kinetics of an engineered gold binding peptide by surface plasmon resonance spectroscopy and a quartz crystal microbalance, Langmuir, 22 (18), 7712-7718, 2006 Article

Akar A, Akkaya EU, Yesiladali SK, Celikyilmaz G, Cokgor EU, Tamerler C<, Orhon D, Cakar ZP, Accumulation of polyhydroxyalkanoates by Microlunatus phosphovorus under various growth conditions, Journal of Industrial Microbiology & Biotechnology, 33 (3), 215-220, 2006 Article

Boyaci IH, Bas D, Dudak FC, Topcu A, Saldamli I, Seker UOS, Tamerler C, Statistical modeling of beta-galactosidase inhibition during lactose hydrolysis, Food Biotechnology, 20 (1), 79-91, 2006

Kantarci N, Tamerler C, Sarikaya M, Haliloglu T, Doruker P, Molecular dynamics simulations on constraint metal binding peptides, Polymer, 46 (12), 4307-4313, 2005 Article

Cakar ZP, Seker UOS, Tamerler C, Sonderegger M, Sauer U, Evolutionary engineering of multiple-stress resistant Saccharomyces cerevisiae, FEMS Yeast Research, 5 (6-7), 569-578, 2005 Article

Oren EE, Tamerler C, Sarikaya M, Metal recognition of septapeptides via polypod molecular architecture, Nano Letters, 5 (3), 415-419, 2005. Article


 

Sarikaya M, Tamerler C, Schwartz DT, Baneyx FOSource, Materials assembly and formation using engineered polypeptides, Annual Review of Materials Research, 34, 373-408, 2004. Article

Bermek H, Gulseren I, Li KC, Jung HC, Tamerler C, The effect of fungal morphology on ligninolytic enzyme production by a recently isolated wood-degrading fungus Trichophyton rubrum LSK-27, World Journal Of Mıcrobiology & Biotechnology, 20 (4), 345-349, 2004. Article

Bermek H, Yazici H, Ozturk H, Tamerler C, Jung HC, Li KC, Brown KM, Ding HS, Xu F, Purification and characterization of manganese peroxidase from wood-degrading fungus Trichophyton rubrum LSK-27, Enzyme and Microbial Technology, 35 (1), 87-92, 2004. Article

Kepenek B, Seker UOS, Cakir AF, Tamerler C, Urgen M, Photocatalytic bactericidal effect of TiO2 thin films produced by cathodic arc deposition method, Bioceramics 16 (254-2), 463-466, 2004 Article

Tamerler C, Dincer S, Heidel D, Zareie MH, Sarikaya, Biomimetic multifunctional molecular coatings using engineered proteins, Progress in Organic Coaiıngs, 47 (3-4), 267-274, 2003. Article

Kara S, Tamerler C, Arda E, Pekcan O, Photon transmission study on swelling of kappa-carrageenan gels prepared in various concentrations, International Journal Of Biological Macromolecules, 33 (4-5), 235-243, 2003. Article

Kara S, Tamerler C, Pekcan O, Cation effects on swelling of k-carrageenan: A photon transmission study, Biopolymers, 70 (2), 240-251, 2003. Article

Sarikaya M, Tamerler C, Jen AKY, Schulten K, Baneyx F, Molecular biomimetics: nanotechnology through biology, Nature Materials, 2, (9), 577-585, 2003.Article

Dulekgurgen E, Yesiladali K, Ovez S, Tamerler C, Artan N, Orhon D, Conventional morphological and functional evaluation of the microbial populations in a sequencing batch reactor performing EBPR, Journal of Environmental Science and Health Part A-Toxıc/Hazardous Substances & Environmental Engineering, 38 (8), 1499-1515, 2003. Article

Kara S, Tamerler C, Bermek H, Pekcan O, Hysteresis during sol-gel and gel-sol phase transitions of kappa-carrageenan: A photon transmission study, Journal of Bioactive and Compatible Polymers, 18 (1), 33-44, 2003. Article

Kara S, Tamerler C, Bermek H, Pekcan O, Cation effects on sol-gel and gel-sol phase transitions of kappa-carrageenan-water system, International Journal of Biological Macromolecules, 31, (4-5), 177-185, 2003. Article

Tamerler C, Ariyo B, Bucke C, Keshavarz T, Effect of mannan and alginate oligosaccharides on production in bioreactors of penicillin G and its biosynthetic intermediates, Annals of Microbiology , 51 (1), 53-60, 2001. Article

Tamerler C, Ulgen K, Kirdar B, Onsan ZI, A structured model for intracellular EcoRI endonuclease production by recombinant E. coli, Process Biochemistry, 36, (7), 621-627,2001. Article

Tamerler C, Onsan ZI, Kirdar B, A comparative study on the recovery of EcoRI endonuclease from two different genetically modified strains of Escherichia coli, Turkish Journal of Chemistry, 25, (1), 63-71,2001 Article

Tamerler C, Keshavarz T,  Lipolytic enzyme production in batch and fed-batch cultures of Ophiostoma piceae and Fusarium oxysporum, Journal of Chemical Technology and Biotechnology, 75, (9), 785-790, 2000.Article

Tamerler C, Keshavarz T, Optimization of agitation for production of swainsonine from Metarhizium anisopliae in stirred tank and airlift reactors, Biotechnology Letters, 21 (6), 501-504, 1999. Article

George E, Tamerler C, Martinez A, Martinez MJ, Keshavarz T, Influence of Growth Medium Composition on the Lipolytic Enzyme Activity of Ophiostoma piliferum (Cartapip (TM)), Journal of Chemical Technology and Biotechnology,74 ,(2) ,137-140, 1999. Article

Tamerler C, Ullah M, Adlard MW, Keshavarz T, Effect of pH On Physiology of Metarhizium Anisopliae for Production of Swainsonine, Fems Mıcrobiology Letters, 168 (1),17-23, 1998. Article

Ariyo B, Tamerler C, Bucke C, Keshavarz T, Enhanced penicillin production by oligosaccharides from batch cultures of Penicillium chrysogenum in stirred-tank reactors, Fems Mıcrobiology Letters, 166 (1),165-170, 1998. Article

 

 

C. Tamerler, S. Dinçer, D. Heidel, N. Karagüler, and M. Sarikaya, Combinatorial Peptide Libraries for Selecting Inorganic-Binding Proteins: A Step in Molecular Biomimetics, Material Research Society. Symposium Proceedings, Vol. 773, No.8.1.1, 2003. Article

U. O.S.Seker, E. E. Oren, C. Selcuki, C. Tamerler and M. Sarikaya, Molecular Modelling of Engineered Noble Metal-Binding Polypeptides, The 15th European Symposium on Quantitative Structure-Activity Relationships & Molecular Modelling, September, Istanbul-Turkey, 2004 in press.

M. Sarikaya, C. Tamerler, A. Jen, D. T. Schwartz, B. Traxler, F. Baneyx, Molecular biomimetics: genetically engineered polypeptides for inorganics and GEPI as molecular building blocks (Invited Paper), Nanosensing: Materials And Devices Conference Proceedings of SPIE Vol. # 5593, 2004, in press

C. Tamerler, M. Sarikaya, Molecular Biomimetics: Building Materials the Nature`s Way, One Molecule At A Time, NBBM Symposium Proceedings, 2004, in press Article



Book Chapters, Research Monographs

 

C. Tamerler and M. Sarikaya, &#8220;Molecular Biomimetics, in Handbook of BioMEMS and Biomedical Nanotechnology, Abe Lee et al. (eds.)

M. Gungormus, X. Xiong, T. Kacar, C. Tamerler, B. A. Parviz, and M. Sarikaya, &#8220;Microscale self-assembly using genetically engineered gold binding polypeptide, in Foundations of Nanoscience and Nanotechnology, J. Reif (ed.) (Science Techchnica, Inc., Washington D.C., 2005, pp. 86-88 (2005).

BOOK Chapter: M. Sarikaya and C. Tamerler;Materials assembly using engineered polpeptides; in Foundations of Nanoscience: Self-assembled Architectures and Devices; John Reif (ed.) (Science Technica Inc. Washington, DC, 2004).

BOOK Chapter: M. Sarikaya and C. Tamerler,Molecular Biomimetics: Building materials the nature’s way: one molecule at a time; Chapter 5, 119-134, in Nanofarication towards Biomedical Applications, C. S. S. R. Kumar, J. Hormes, and C. Leuschner (eds.) Wiley-VCH, Weinheim, Germany, 2005).

 

INVITED TALKS


1. “Nanotechnology Potential in Turkey", organized by TUBITAK-Brussel, July, 2007

2. "Modelling The Interaction of Biomolecules with Inorganic Surfaces", CECAM, Lyonn, France, July, 2007

3. “Self assembly of peptides in biological materials ” Protein Assembly in Materials, Biology and Medicine, Girit, Greece, July- 2007

4. Molecular Engineering by Genetically Designed Peptides”4rd Annual Meeting of Foundation of Nanoscience, Snowbird, Utah, USA, April, 2007:KEY NOTE SPEAKER

5. “Post-selection engineering of inorganic binding peptides” NanoTR III, Bilkent Universitesi, Ankara, May-2007

6. “Transforming journey: ITU-UW Experience on Bionanotechnology”, Turkish-American Scientist and Scholars Association (TASSA) 3rd Annual Meeting, March, 2007, Yale University, New Haven, USA

7. “Selection Engineering of inorganic binding peptides for improved functionality”, Seventh International Symposium on Biomimetic Materials Processing, January, 2007, Nagoya, Japan

8. “Genetic Engineering Tools on Creating Materials” GORDON Conference on Biomineralization, Colby Sawyer College, New London, NH, 2006.

9. “Self Assembled Peptide Based Functional Molecular Constructs” 3rd Annual Meeting of Foundation of Nanoscience, Snowbird, Utah, 2006

10. “Designing Heterofunctional Proteins for Functional Materials and Systems” TMS Symposium on “Biological Materials Science and Engineering”, San Antonio, USA, 2006

11. “Selection Engineering of inorganic binding peptides for improved functionality”, Sixth International Symposium on Biomimetic Materials Processing (BMMP-6), January, 2006, Nagoya, Japan

12. “Gelecegin Teknolojileri ve Firsatları: Biyoteknolojiden Biyonanoteknolojiye Gecis”. 5. Sanayi Kongresi, 2006, Istanbul, TR

13. “Molecular Tailoring of building blocks for genetically engineered materials” Biocrystallization Section in 16th American Conference on Crystal Growth and Epitaxy (ACCGE 16), Big Sky Resort, Montana, July,10-15, 2005

14. “Recognition and binding of engineered polypeptides”, Fifth International Symposium on Biomimetic Materials Processing (BMMP-5), January, 2005, Nagoya, Japan

15. “Genetically Engineered Inorganic Binding Peptides as Molecular Tools in Bionanotechnology” International Molecular Medicine Conference, May, 2005, Istanbul, Turkey

16. “Protocols for genetically engineered polypeptides for inorganics”, Fourth International Symposium on Biomimetic Materials Processing (BMMP-4), Japan 2004, Nagoya, Japan


-Several invited talks in international and national universities, and research centers